Application of partial restriction procedure in both shotgun and non-random strategies for nucleotide sequencing

Partial digestion of a target DNA fragment with 4-bp-recognition restriction enzymes followed by a forced ligation to an M13 vector was employed for the construction of a subfragment library. The library can be used for either shotgun or non-random nucleotide sequencing. Application of the partial digests generated with the 4-bp recognition restriction enzymes instead of DNase I in the improved non-random strategy for nucleotide sequencing (Li and Wu, 1987) made the procedure as easy as that of the random strategy. The library can also be used in shotgun nucleotide sequencing directly, and few self-ligated subfragments were found. The usefulness of this procedure was demonstrated by the sequencing of a goat 6.5-kb EcoRI fragment, which is located 5' to the globin gene.     

Multiple forms and specificity of coniferyl alcohol dehydrogenase from cambial regions of higher plants

Alcohol dehydrogenases of 89 species of plants, from the Bryophyta, Pteridophyta, Gymnosperms and Angiosperms were examined by starch gel electrophoresis for their substrate and coenzyme specificities. High activities and multiple bands were observed with EtOH and NAD in most species. The same, but weaker banding patterns were also observed with benzyl alcohol and salicin. When coniferyl alcohol was used as substrate, activity was found only with NADP as coenzyme and the resulting bands were distinct from those obtained with the other substrates. Most plants tested had only one or occasionally a second coniferyl alcohol dehydrogenase band. Salix species were an exception, with multiple bands found in each of the species tested.     

Regulation of ribosomal RNA cistron number in a strain of Neurospora crassa with a duplication of the nucleolus organizer region

Some progeny from a cross of the translocation mutant T(VL→IVL)AR33 with wild-type Neurospora crassa are double nucleolus organizer (DNO) strains, usually displaying two distinct nucleolus organizer regions. The DNO strain is sterile but displays the same growth response as normal laboratory strains of Neurospora. We used DNA-DNA hybridization techniques to quantify the number of rRNA cistrons in the DNO mutant and its vegetative progeny. Comparisons of the rate of hybridization of genomic DNA from the parental AR33 strain and from the DNO strain showed that hybridization was more rapid for the DNO strain than for the parental strain. Successive vegetative progeny of the DNO strain displayed hybridization rates intermediate to those of the original DNO strain and the parental single nucleolus strain, indicating that the number of rRNA cistrons had decreased during vegetative propagation. Estimates of rRNA cistron number obtained from comparisons of the amount of single copy DNA and rDNA hybridized to genomic DNO and AR33 DNA at saturation indicate that the parental AR33 strain contains 225 copies of the rRNA repeat unit, while the DNO strain has approx. 440 copies. The number of rRNA cistrons decreases gradually in the successive vegetative progeny, approximating the parental haploid value by the eleventh vegetative transfer.     

可可西里地区藏羚的社群特征

藏羚(Pantholopshodgsoni)的集群类型有雌性群、雄性群、母仔群、雌雄混群和独羚5种形式。2002年7月～2003年12月,在可可西里地区沿青藏公路设立试验区,直接观察到936群次,计13795只次藏羚。藏羚的集群类型受到生育周期的影响,季节间差异显著。春季以雌性群(60.49%)和雄性群(30.86%)为主;夏季和秋季主要为雌性群(41.65%,49.66%)和母仔群(49.36%,33.67%);雌雄混群(58.14%)主要出现在冬季。雄性群在1年中很少见,尤其是夏秋两季,冬季较为常见,多由亚成体雄性组成。独羚是一种特殊的集群类型,占11.32%。常见的集群大小为2～20只,占71.90%,其次是21～200只的群,占16.35%;>200只的集群极少,仅占0.43%,且仅出现于夏季产羔往返迁徙途中。藏羚的集群大小受竞争、捕食风险以及迁徙繁殖的共同影响。藏羚的集群极不稳定,交配期雌雄混合群受雄性亚成体的干扰经常改变,而在迁徙季节大群和小群之间的转换也很频繁。大型集群为雌性群或母仔群,其最适集群大小为2～20只。     

在黄土丘陵区土质路面种草

土质道路水土流失是所有人工生态系统中最严重的土地利用类型,土壤侵蚀模数是相同条件下林地的250倍,农村道路修筑破坏了区域生态景观的完整性,为景观生态修复理论与技术研究提供了重要的实验场地。广大山区农村田间地块道路在种植和收获季节以外长期处于闲置状态,这为植物的种植和生长提供了可能。1997～2001年,以中国黄土丘陵区陕西省延安市小砭沟小流域农田道路为背景,以防止和减轻路面汇流引发的水土流失对道路的破坏和修复农村道路景观生态系统为目的,采用小区径流监测、施工统计和定点观测的方法,在路面进行了为期5a的种草实验。研究结果显示,农田作业道路路面不仅可以种草,而且具有一定生态经济价值,在条播下,胡枝子、小冠花、无芒雀麦每km年产值可达1068.88～3150.27元;同时,路面牧草可承受适度的通行压力,禾本科牧草一般可承受300t·次/a以下车辆碾压;道路种植禾本科牧草后,除有机质外,土壤中其它营养成份均有不同程度的亏损,因此有必要补充各种肥料延长路面牧草使用年限和提高牧草防蚀能力;路面种草后径流量减少46.15%～69.30%,土壤侵蚀量减少54.53%～77.80%,建设成本仅为石子路的27.69%～35.99%,维护费用仅为土质道路的30.52%,是一种经济可行的技术途径。道路种草后,路面雨季泥泞、旱季尘土飞扬的劣质景观被蜿蜒的绿色道路景观所取代,形似镶嵌在绵延山谷中的绿飘带,这无论在理论还是技术方面都是生态修复学和景观生态学研究的重要方向之一。     

RT-PCR一步法检测甲型肝炎活病毒方法的建立

建立灵敏、特异、快速检测甲型肝炎活病毒(HAV)的方法。提取HAV总RNA,选用HAV高保守区为目标区,设计合成一对引物,通过RT-PCR反应扩增其核酸,用琼脂糖凝胶电泳法检测其扩增产物,紫外灯下观察,约200bp处为目标片段,根据观察结果,计算HAV滴度。RT-PCR一步法快速、灵敏、重复性好、特异性强,可用于甲型肝炎活病毒检测。     

SARS-CoV S蛋白受体结合区的重组表达及免疫原性分析

为了表达SARS-CoV的S蛋白的受体结合区并对其免疫原性进行分析,用PCR方法扩增S蛋白的受体结合区基因片段,克隆至原核表达质粒pET-F32a＋并在大肠杆菌中表达,应用Western—blot鉴定表达的目的蛋白,而后以该蛋白作为诊断抗原包被酶联卡反来检测20份SARS病人血清和28份健康人血清,结果原核表达的S蛋白能够和所用的SARS病人血清反应。这提示表达的S重组蛋白具有良好的抗原性。将变性纯化的重组蛋白和复性蛋白分别皮下免疫小鼠,第三次免疫一周后收集抗血清,用ELISA测定抗体和同时测定中和抗体活性。用变性的抗原免疫的小鼠血清均无中和活性;而用复性的蛋白免疫的小鼠产生了中和抗体。实验表明,S蛋白受体结合区无线性中和表位,中和抗体的产生是由构象表位诱导的。提示该蛋白有可能应用于亚单位疫苗的研究。     

农杆菌介导的水稻双载体共转化法中部分影响因素的研究

以T-DNA区分别只含有潮霉素选择标记基因(HPT)和GUS报告基因的双元载体pCAMBIA1300和pCAMBIA0301用于农杆菌介导的水稻共转化试验。根据经农杆菌浸染并共培养3d后水稻愈伤组织中的GUS瞬间表达情况及其稳定共转化率,测定了不同农杆菌菌株搭配及其不同浓度配比对共转化效率的影响。结果表明,在两种农杆菌菌液浓度比为1:1的情况下,农杆菌EHA105/pCAMBIA1300与EHA105/pCAMBIA0301组合共转化水稻的效率要高于其他菌株的组合;在以农杆菌EHA105/pCAMBIA1300与EHA105/pCAMBIA0301进行共转化时,两种菌液浓度比为1:2时共转化效率最高。     

A protocol for rapid isolation of flanking regions from short known sequences

We present a method for rapid isolation of flanking regions from amplified fragment length polymorphism (AFLP) fragments based on thermal asymmetric interlaced (TAIL)-PCR, in which one sequence-specific primer and one degenerate primer derived from an conserved motif found in homologies of the known sequence were used. The final result showed this to be a simple and efficient strategy, especially for short known sequences containing coding regions. Moreover this protocol was especially useful for species with little available genome information such as Hongkong Kumquat (Fortunella hindsii), since most of their genes have known homologies in other species such asArabidopsis and rice.     

Polymorphic sequence‐characterized codominant loci in the chestnut blight fungus,Cryphonectria parasitica

Studies on the population biology of the chestnut blight fungus, Cryphonectria parasitica, have previously been carried out with dominant restriction fragment length polymorphism (RFLP) fingerprinting markers. In this study, we describe the development of 11 codominant markers from randomly amplified polymorphic DNAs (RAPDs). RAPD fragments were cloned and sequenced, and polymerase chain reaction (PCR) primers were designed flanking insertions/deletions. Primers labelled with fluorescent dyes were combined in multiplex reactions to assay five or six loci simultaneously in a capillary sequencing system. These codominant markers have the potential to complement RFLP methods for studying C. parasitica.